Minoru Kanehisa

Most Cited Papers

« Back

Citation   Year(Web of Science as of April 3, 2017)
1 5546 2000 Kanehisa, M. and Goto, S. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28, 27-30. [pubmed] [pdf]
2 1784 2008 Kanehisa, M., Araki, M., Goto, S., Hattori, M., Hirakawa, M., Itoh, M., Katayama, T., Kawashima, S., Okuda, S., Tokimatsu, T., and Yamanishi, Y. KEGG for linking genomes to life and the environment. Nucleic Acids Res. 36, D480-D484. [pubmed] [pdf]
3 1662 2004 Kanehisa, M., Goto, S., Kawashima, S., Okuno, Y., and Hattori, M. The KEGG resource for deciphering the genome. Nucleic Acids Res. 32, D277-D280. [pubmed] [pdf]
4 1612 2012 Kanehisa, M., Goto, S., Sato, Y., Furumichi, M., and Tanabe, M. KEGG for integration and interpretation of large-scale molecular datasets. Nucleic Acids Res. 40, D109-D114. [pubmed] [pdf]
5 1543 2006 Kanehisa, M., Goto, S., Hattori, M., Aoki-Kinoshita, K.F., Itoh, M., Kawashima, S., Katayama, T., Araki, M., and Hirakawa, M. From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res. 34, D354-357. [pubmed] [pdf]
6 1333 1999 Ogata, H., Goto, S., Sato, K., Fujibuchi, W., Bono, H., and Kanehisa, M. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 27, 29-34. [pubmed] [pdf]
7 1235 1992 Nakai, K. and Kanehisa, M. A knowledge base for predicting protein localization sites in eukaryotic cells. Genomics 14, 897-911. [pubmed]
- 1162 2001 Kuroda, M., et al. Whole genome sequencing of meticillin-resistant Staphylococcus aureus. Lancet 357, 1225-1240. [pubmed]
8 1098 2010 Kanehisa, M., Goto, S., Furumichi, M., Tanabe, M., and Hirakawa, M. KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res. 38, D355-D360. [pubmed] [pdf]
9 1012 2014 Kanehisa, M., Goto, S., Sato, Y., Kawashima, M., Furumichi, M., and Tanabe, M. Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res. 42, D199-D205. [pubmed] [pdf]
10 811 1985 Klein, P., Kanehisa, M., and DeLisi, C. The detection and classification of membrane-spanning proteins. Biochim. Biophys. Acta 815, 468-476. [pubmed]
11 800 2007 Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A., and Kanehisa, M. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35, W182-W185. [pubmed] [pdf]
12 685 2002 Kanehisa, M., Goto, S., Kawashima, S., and Nakaya, A. The KEGG databases at GenomeNet. Nucleic Acids Res. 30, 42-46. [pubmed] [pdf]
13 534 1991 Nakai, K. and Kanehisa, M. Expert system for predicting protein localization sites in Gram-negative bacteria. Proteins 11, 95-110. [pubmed] [pdf]
14 436 2002 Kanehisa, M. The KEGG database. Novartis Found. Symp. 247, 91-103. [pubmed] [pdf]
15 335 2000 Kawashima, S. and Kanehisa, M. AAindex: Amino Acid index database. Nucleic Acids Res. 28, 374. [pubmed] [pdf]
16 320 1982 Goad, W.B. and Kanehisa, M.I. Pattern recognition in nucleic acid sequences. I. A general method for finding local homologies and symmetries. Nucleic Acids Res. 10, 247-263. [pubmed] [pdf]
17 311 2008 Kawashima, S., Pokarowski, P., Pokarowska, M., Kolinski, A., Katayama, T., and Kanehisa, M. AAindex: amino acid index database, progress report 2008. Nucleic Acids Res. 36, D202-D205 (2008). [pubmed] [pdf]
- 297 2003 Hihara, Y., Sonoike, K., Kanehisa, M., and Ikeuchi, M. DNA microarray analysis of redox responsive genes in the genome of the cyanobacterium Synechocystis sp. PCC 6803. J. Bacteriol. 185, 1719-1725. [pubmed] [pdf]
18 250 2016 Kanehisa, M., Sato, Y., Kawashima, M., Furumichi, M., and Tanabe, M. KEGG as a reference resource for gene and protein annotation. Nucleic Acids Res. 44, D457-D462. [pubmed] [pdf]
- 242 2004 Imanishi, T, et al. Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones. PLoS Biol. 2, e162. [pubmed] [pdf]
19 233 2003 Park, K.-J. and Kanehisa, M. Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs. Bioinformatics 19, 1656-1663. [pubmed] [pdf]
20 227 1999 Kawashima, S., Ogata, H., and Kanehisa, M. AAindex: amino acid index database. Nucleic Acids Res. 27, 368-369. [pubmed] [pdf]
- 220 1985 Leonard, W.J., Depper, J.M., Kanehisa, M., Kronke, M., Peffer, N.J., Svetlik, P.B., Sullivan, M., and Greene, W.C. Structure of the human interleukin-2 receptor gene. Science 230, 633-639. [pubmed]
21 213 1982 Kanehisa, M.I. Los Alamos sequence analysis package for nucleic acids and proteins. Nucleic Acids Res. 10, 183-196. [pubmed] [pdf]
22 210 1997 Kanehisa, M. A database for post-genome analysis. Trends Genet. 13, 375-376. [pubmed]
- 209 2003 Brudler, R., Hitomi, K., Daiyasu, H., Toh, H., Kucho, K., Ishiura, M., Kanehisa, M., Roberts, V.A., Todo, T., Tainer, J.A., and Getzoff, E.D. Identification of a new cryptochrome class: structure, function and evolution. Mol. Cell 11, 59-67. [pubmed]
23 208 1996 Tomii, K. and Kanehisa, M. Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins. Protein Eng. 9, 27-36. [pubmed] [pdf]
24 203 2002 Goto, S., Okuno, Y., Hattori, M., Nishioka, T. and Kanehisa, M. LIGAND: database of chemical compounds and reactions in biological pathways. Nucleic Acids Res. 30, 402-404. [pubmed] [pdf]
25 202 2008 Yamanishi, Y., Araki, M., Gutteridge, A., Honda, W., and Kanehisa, M. Prediction of drug-target interaction networks from the integration of chemical and genomic spaces. Bioinformatics 24, i232-i240. [pubmed] [pdf]
26 187 2003 Hattori, M., Okuno, Y., Goto, S., and Kanehisa, M. Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways. J. Am. Chem. Soc. 125, 11853-11865 [pubmed]
27 183 2008 Okuda, S., Yamada, T., Hamajima, M., Itoh, M., Katayama, T., Bork, P., Goto, S., and Kanehisa, M. KEGG Atlas mapping for global analysis of metabolic pathways. Nucleic Acids Res. 36, W423-W426 [pubmed] [pdf]
- 171 2001 Suzuki, I., Kanesaki, Y., Mikami, K., Kanehisa, M., and Murata, N. Cold-regulated genes under control of the cold sensor Hik33 in Synechocystis. Mol. Microbiol. 40, 235-244. [pubmed] [pdf]
28 158 1988 Nakai, K., Kidera, A., and Kanehisa, M. Cluster analysis of amino acid indices for prediction of protein structure and function. Protein Eng. 2, 93-100. [pubmed]
29 149 2010 Yamanishi, Y., Kotera, M., Kanehisa, M., and Goto, S. Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework. Bioinformatics 26, i246-i254. [pubmed] [pdf]
30 130 1978 Kanehisa, M.I. and Tsong, T.Y. Cluster model of lipid phase transitions with application to passive permeation of molecules and structure relaxations in lipid bilayers. J. Am. Chem. Soc. 100, 424-432.
31 123 2006 Hashimoto, K., Goto, S., Kawano, S., Aoki-Kinoshita, K.F., Ueda, N., Hamajima, M., Kawasaki, T., and Kanehisa, M. KEGG as a glycome informatics resource. Glycobiology 16, 63R-70R (2006). [pubmed] [pdf]
- 114 2003 Hihara, Y., Sonoike, K., Kanehisa, M., and Ikeuchi, M. DNA microarray analysis of redox responsive genes in the genome of the cyanobacterium Synechocystis sp. PCC 6803. J. Bacteriol. 185, 1719-1725 (2003). [pubmed] [pdf]
32 112 2000 Ogata, H., Fujibuchi, W., Goto, S., and Kanehisa, M. A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters. Nucleic Acids Res. 28, 4021-4028. [pubmed] [pdf]
- 107 2011 Yamada, T., Letunic, I., Okuda, S., Kanehisa, M., and Bork, P. iPath2.0: interactive pathway explorer. Nucleic Acids Res. 39, W412-W415. [pubmed] [pdf]
33 107 2007 Aoki-Kinoshita, K.F. and Kanehisa, M. Gene annotation and pathway mapping in KEGG. Methods Mol. Biol. 396, 71-92. [pubmed]
34 105 1977 Tsong, T.Y. and Kanehisa, M.I. Relaxation phenomena in aqueous dispersions of synthetic lecithins. Biochemistry 16, 2674-2680. [pubmed]
34 105 1998 Bono, H., Ogata, H., Goto, S., and Kanehisa, M. Reconstruction of amino acid biosynthesis pathways from the complete genome sequence. Genome Res. 8, 203-210. [pubmed] [pdf]
36 102 1984 Kanehisa, M. Use of statistical criteria for screening potential homologies in nucleic acid sequences. Nucleic Acids Res. 12, 203-213. [pubmed] [pdf]